smaltdb¶
Smalt index builder
Builds a smalt index from a reference sequence
Commands¶
- clean
- Remove all job data, not the Moa job itself, note that this must be implemented by the template.
- run
- Create the smalt index
Filesets¶
- input
Input fasta file for the smalt database
type: singlecategory: inputoptional: Falsepattern: */*.fasta- output
database name to create
type: singlecategory: outputoptional: {}pattern: db
Parameters¶
- word_length
word length
type: intdefault: 10optional: True- word_spacing
word spacing
type: intdefault: 6optional: True
miscellaneous¶
- Backend
- ruff
- Author
- Mark Fiers
- Creation date
- Wed Nov 10 07:56:48 2010
- Modification date
- Wed Dec 09 07:56:48 2010