recursive_map¶
Recursively map a genome to the reference
Recursively map a resequence dataset against a reference genome
Commands¶
- run
- recusive map
Filesets¶
- fq_forward
- fastq input files directory - forward
- fq_reverse
fastq input files directory - reverse
type: mapsource: fq_forwardcategory: inputoptional: Truepattern: */*_2.fq- output
base output filename
type: singlecategory: outputoptional: Truepattern: output
reference
type: singlecategory: prerequisiteoptional: Falsepattern: */*
Parameters¶
- iterations
no of iterations to run
type: integerdefault: 3optional: True- param_first
First set of parameters - get the low hanging fruit
type: stringdefault: –fastoptional: True- param_second
Second set of parameters - more sensitive
type: stringdefault: –very-sensitiveoptional: True- threads
Number of threads to use
type: integerdefault: 4optional: True
miscellaneous¶
- Backend
- ruff
- Author
- Mark Fiers
- Creation date
- Fri, 08 Jun 2012 13:32:30 +1200
- Modification date
- Fri, 08 Jun 2012 13:43:19 +1200