bdbb

Bidirectional best BLAST hit

Discover the bidirectional best blast hit between two sets of sequences

Commands

clean
Remove all job data, not the Moa job itself, note that this must be implemented by the template.
run
generate a list of bidirectional best blast hits between two databases of sequences

Filesets

input_a

First multi fasta input set

type: single
category: input
optional: False
pattern: */*.fasta
input_b

Second multi fasta input set

type: single
category: input
optional: False
pattern: */*.fasta
output

List of bidirectional best blasts hits

type: map
source: input_a
category: output
optional: True
pattern: */*.list

Parameters

eval

e value cutoff

type: float
default: 1e-10
optional: True
extract

Extract the identified sequences from the input fasta files

type: boolean
default: False
optional: True
nothreads

Threads to run blast with with

type: integer
default: 4
optional: True
protein

Is this a protein set

type: boolean
default: False
optional: True
tblastx

If this is a nucleotide set, use tblastx?? (otherwise use blastn)

type: boolean
default: F
optional: True

miscellaneous

Backend
ruff
Author
Mark Fiers
Creation date
Wed Nov 10 07:56:48 2010
Modification date
unknown