abyss_pe

Run Abysspe

Commands

clean

Remove all job data

run

Execute abysspe in paired-end mode

Filesets

fq_forward

fastq input files directory - forward

fq_reverse

fastq input files directory - reverse

type: map

source: fq_forward

category: input

optional: True

pattern: */*_2.fq

output

soap denovo output file

type: single

category: output

optional: True

pattern: {}

Parameters

joinpairs

number of pairs needed to consider joining two contigs

type: integer

default: 10

optional: True

kmer

kmer size

type: integer

default: 31

optional: True

threads

no threads to use

type: integer

default: 3

optional: True

miscellaneous

Backend

ruff

Author

Mark Fiers

Creation date

Mon, 21 Nov 2011 12:47:16

Modification date

Mon, 21 Nov 2011 12:47:22