filterwgs_pair

Execute a “map22” ad-hoc analysis - two input files, two output files

Filter raw WGS data

Commands

run

Filter WGS data

Filesets

input1

forward input fastq

input2

reverse input fastq

type: map

source: input1

category: input

optional: False

pattern: */*

output1

forward output fastq

type: map

source: input1

category: output

optional: True

pattern: ./*

output2

reverse output fastq

type: map

source: input1

category: output

optional: True

pattern: ./*

Parameters

adapters

Fasta file with the adapter sequences to trim

type: file

default: {}

optional: False

minlen

Minimum remaining sequence length

type: int

default: 50

optional: True

qual

quality threshold causing trimming

type: int

default: 13

optional: True

title

type: {}

default: Filter paired fastq files using fastq-mcf

optional: {}

miscellaneous

Backend

ruff

Author

Mark Fiers

Creation date

Tue Mar 29 16:34:19 2011

Modification date

Mon, 13 Feb 2012 09:16:36 +1300