fastx_qual_stats¶

run fastx_quality_stats, fastq_quality_boxplot_graph.sh and fastx_nucleotide_distribution_graph.sh

Commands¶

clean: Remove all job data, not the Moa job itself
run: run fastx_quality_stats, fastq_quality_boxplot_graph.sh and fastx_nucleotide_distribution_graph.sh

boxplot_output

type: map

source: input

category: output

optional: {}

pattern: ./*.png

nuc_distr_output

type: map

source: input

category: output

optional: {}

pattern: ./*.png

qual_output

type: map

source: input

category: output

optional: {}

pattern: ./*.txt

gen_postScript_file: Generate PostScript (.PS) file. Default is PNG image.

type: boolean

default: False

optional: True
graph_title: Title - will be plotted on the graph.

type: string

default: {{ input_glob }}

optional: True
help: help screen

type: boolean

default: False

optional: True
new_out_format: New output format (with more information per nucleotide/cycle)

type: boolean

default: False

optional: True