fastqc

Run FastQC for fastq QC

Run FastQC on a set a fastq files - quality assessment

Commands

finish

Run Fastqc

finish delegates execution to: report

report
Generate a simple fastqc report
run
no help defined

Filesets

input
fastqc input files’
touch

touch files - track if a file has been processed - do not touch this unless you know what you’re doing.

type: map
source: input
category: output
optional: True
pattern: ./*.touch

Parameters

output_dir

output directory for the fastQC report

type: dir
default: .
optional: True

miscellaneous

Backend
ruff
Author
Mark Fiers
Creation date
Thu, 28 Apr 2011 09:27:17 +1200
Modification date
Thu, 28 Apr 2011 14:19:04 +1200