bamextract

bamextract

Extract a region from a BAM file

Commands

clean

Remove all job data, not the Moa job itself, note that this must be implemented by the template.

run

Extract a region from a BAM file

Filesets

bam

BAM input

type: single

category: input

optional: False

pattern: {}

regions

List with regions to extract (id seqid start stop)

type: single

category: input

optional: False

pattern: {}

vcf

optional VCF input

type: single

category: input

optional: True

pattern: {}

Parameters

flank

flanking region to extract

type: integer

default: 100

optional: {}

miscellaneous

Backend

ruff

Author

Mark Fiers

Creation date

Wed Nov 10 07:56:48 2010

Modification date

Wed Nov 10 07:56:48 2010