bowtie

Bowtie

Run BOWTIE on an set of input files (query) vs a database index.

Commands

clean
Remove all job data, not the Moa job itself, note that this must be implemented by the template
run
no help defined

Filesets

input
Fasta/fastq input files for bowtie
output

Output files

type: map
source: input
category: output
optional: {}
pattern: ./*.bam

Parameters

db

The (basename of the) bowtie database to use.

type: string
default: {}
optional: False
extra_params

extra parameters to feed bowtie

type: string
default: ``
optional: True
input_format

Format of the input files

type: set
default: fastq
optional: True

miscellaneous

Backend
ruff
Author
Mark Fiers
Creation date
Wed Nov 10 07:56:48 2010
Modification date
Wed Nov 10 07:56:48 2010