cdsmatrix

CdsMatrix

Predicts (prokaryotic) using glimmer3.

Commands

clean

Remove all job data, not the Moa job itself, note that this must be implemented by the template.

run

Generate a matrix of CDS’s

Filesets

input

Directory with the cds files for Glimmer3

output

Output blast files

type: map

source: input

category: output

optional: True

pattern: ./*.out

reference

reference multi fasta file

type: single

category: prerequisite

optional: {}

pattern: */*.fasta

table

table files

type: map

source: input

category: output

optional: True

pattern: ./*.tab

Parameters

cutoff

score cutoff value - disregards hits below this score

type: {}

default: 100

optional: True

miscellaneous

Backend

ruff

Author

Mark Fiers

Creation date

Wed Nov 10 07:56:48 2010

Modification date

Thu, 21 Jul 2011 20:31:10 +1200