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TemplatesΒΆ

Contents:

  • abyss_pe
  • abyss_se
  • archroot
  • autohagfish
  • bamextract
  • bdbb
  • bfast_aln
  • bfast_db
  • blast
  • blastdb
  • bowtie
  • bowtie_pe
  • bowtie_se
  • bowtiedb
  • bwa_aln
  • bwa_index
  • bwa_sampe
  • bwa_samse
  • cdsmatrix
  • empty
  • fastainfo
  • fastqc
  • fastx_clipper
  • fastx_qual_stats
  • filterwgs_pair
  • genemarks
  • glimmer3
  • gmap
  • gmapdb
  • hagfish
  • kanga
  • kangar_pe
  • kangar_se
  • kangax
  • map
  • map2
  • map22
  • maq_pe
  • maq_se
  • mummer
  • ncbi
  • newjobtest
  • orthomcl
  • project
  • recursive_map
  • reduce
  • samtools_pileup
  • simple
  • smalt_pe
  • smaltdb
  • soapdenovo_pe
  • soapdenovo_postprocess
  • statsidx
  • sync
  • unittest
  • wget

Logo

Table of contents

  • Goals
  • Installation
  • Tutorial 1
  • Tutorial 2
  • Configuring Moa
  • Execution
  • Filesets
  • Three core templates
  • Synchronizing jobs
  • Git integration
  • Contribute
  • Acknowledgements
  • How to write a template
  • Command reference
  • Templates
    • abyss_pe
    • abyss_se
    • archroot
    • autohagfish
    • bamextract
    • bdbb
    • bfast_aln
    • bfast_db
    • blast
    • blastdb
    • bowtie
    • bowtie_pe
    • bowtie_se
    • bowtiedb
    • bwa_aln
    • bwa_index
    • bwa_sampe
    • bwa_samse
    • cdsmatrix
    • empty
    • fastainfo
    • fastqc
    • fastx_clipper
    • fastx_qual_stats
    • filterwgs_pair
    • genemarks
    • glimmer3
    • gmap
    • gmapdb
    • hagfish
    • kanga
    • kangar_pe
    • kangar_se
    • kangax
    • map
    • map2
    • map22
    • maq_pe
    • maq_se
    • mummer
    • ncbi
    • newjobtest
    • orthomcl
    • project
    • recursive_map
    • reduce
    • samtools_pileup
    • simple
    • smalt_pe
    • smaltdb
    • soapdenovo_pe
    • soapdenovo_postprocess
    • statsidx
    • sync
    • unittest
    • wget
  • Moa API

Links

  • Latest docs
  • Moa on Github
  • Moa issue tracker
  • Python package index

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© Copyright 2010-2012 Mark Fiers. Last updated on Aug 14, 2016. Created using Sphinx 1.3.5.