bfast_db¶
Generate db index files for aligning reads with bfast
Commands¶
- clean
- Remove all job data, not the Moa job itself
- run
- run bfast fasta2brg and index commands
Filesets¶
- fa_input
- fasta input file
Parameters¶
- algorithm_colour_space
true -> colour space, false -> NT space
type: booleandefault: Falseoptional: True- depth
The depth of the splitting(d). The index will be split into 4^d parts.
type: integerdefault: 0optional: True- extra_params
Any extra parameters
type: stringdefault: ``optional: True- hash_width
The hash width for the index (recommended from manual = 14)
type: integerdefault: {}optional: False- index_num
Specifies this is the ith index you are creating
type: integerdefault: 1optional: True- mask
The mask or spaced seed to use.
type: stringdefault: {}optional: False- print_params
print program parameters
type: booleandefault: Falseoptional: True- thread_num
Specifies the number of threads to use
type: integerdefault: 1optional: True- timing_information
specifies output timing information
type: booleandefault: Trueoptional: True- usage_summary
Display usage summary (help)
type: booleandefault: Falseoptional: True
miscellaneous¶
- Backend
- ruff
- Author
- Yogini Idnani, Mark Fiers
- Creation date
- Wed Feb 15 10:06:48 2011
- Modification date
- unknown