bwa_index¶
Bwa index builder
Builds a bwa index from a reference sequence
Commands¶
- clean
- Remove all job data
- run
- Create the index
Filesets¶
- input
Input fasta file for the bowtie database
type: singlecategory: inputoptional: Falsepattern: */*.fasta
Parameters¶
- algorithm
Algorithm for constructing BWT index. Available options are ‘is’ and ‘bwtsw’
type: stringdefault: isoptional: True- color_space
input sequences are in the color space
type: booleandefault: Falseoptional: True- prefix
Name of the bwa index to create
type: stringdefault: dboptional: True
miscellaneous¶
- Backend
- ruff
- Author
- Mark Fiers, Yogini Idnani
- Creation date
- Wed Nov 10 07:56:48 2010
- Modification date
- Wed Nov 10 07:56:48 2010
