Table of contents
- Goals
- Installation
- Tutorial 1
- Tutorial 2
- Configuring Moa
- Execution
- Filesets
- Three core templates
- Synchronizing jobs
- Git integration
- Contribute
- Acknowledgements
- How to write a template
- Command reference
- Templates
- abyss_pe
- abyss_se
- archroot
- autohagfish
- bamextract
- bdbb
- bfast_aln
- bfast_db
- blast
- blastdb
- bowtie
- bowtie_pe
- bowtie_se
- bowtiedb
- bwa_aln
- bwa_index
- bwa_sampe
- bwa_samse
- cdsmatrix
- empty
- fastainfo
- fastqc
- fastx_clipper
- fastx_qual_stats
- filterwgs_pair
- genemarks
- glimmer3
- gmap
- gmapdb
- hagfish
- kanga
- kangar_pe
- kangar_se
- kangax
- map
- map2
- map22
- maq_pe
- maq_se
- mummer
- ncbi
- newjobtest
- orthomcl
- project
- recursive_map
- reduce
- samtools_pileup
- simple
- smalt_pe
- smaltdb
- soapdenovo_pe
- soapdenovo_postprocess
- statsidx
- sync
- unittest
- wget
- Moa API