bdbb¶
Bidirectional best BLAST hit
Discover the bidirectional best blast hit between two sets of sequences
Commands¶
- clean
- Remove all job data, not the Moa job itself, note that this must be implemented by the template.
- run
- generate a list of bidirectional best blast hits between two databases of sequences
Filesets¶
- input_a
First multi fasta input set
type: singlecategory: inputoptional: Falsepattern: */*.fasta- input_b
Second multi fasta input set
type: singlecategory: inputoptional: Falsepattern: */*.fasta- output
List of bidirectional best blasts hits
type: mapsource: input_acategory: outputoptional: Truepattern: */*.list
Parameters¶
- eval
e value cutoff
type: floatdefault: 1e-10optional: True- extract
Extract the identified sequences from the input fasta files
type: booleandefault: Falseoptional: True- nothreads
Threads to run blast with with
type: integerdefault: 4optional: True- protein
Is this a protein set
type: booleandefault: Falseoptional: True- tblastx
If this is a nucleotide set, use tblastx?? (otherwise use blastn)
type: booleandefault: Foptional: True
miscellaneous¶
- Backend
- ruff
- Author
- Mark Fiers
- Creation date
- Wed Nov 10 07:56:48 2010
- Modification date
- unknown