smaltdb

Smalt index builder

Builds a smalt index from a reference sequence

Commands

clean

Remove all job data, not the Moa job itself, note that this must be implemented by the template.

run

Create the smalt index

Filesets

input

Input fasta file for the smalt database

type: single

category: input

optional: False

pattern: */*.fasta

output

database name to create

type: single

category: output

optional: {}

pattern: db

Parameters

word_length

word length

type: int

default: 10

optional: True

word_spacing

word spacing

type: int

default: 6

optional: True

miscellaneous

Backend

ruff

Author

Mark Fiers

Creation date

Wed Nov 10 07:56:48 2010

Modification date

Wed Dec 09 07:56:48 2010