Welcome to Moa!

Lightweight, command line, workflows for bioinformatics

Moa aims to assist a bioinformatician to organize, document, share, execute and repeat workflows in a command line environment without losing flexibility, and, at all times giving the user full access to all aspects of the workflow (see also Goals).

NOTE: both the software and the manual are under development. Things might change.

Quick links

• Source code: https://github.com/mfiers/Moa
• Issue tracker: https://github.com/mfiers/Moa/issues (old issue tracker)
• Python Package Index: http://pypi.python.org/pypi/moa/

Table of contents:

• Goals
• Introduction
• Installation
• Three core templates
• How to write a template
• Command reference
• Templates
• Moa API

More information

• Browse the Moa source at Github.
• Download a pdf version of the manual.

Indices and tables

• Index
• Module Index
• Search Page